Public barcode demux: SRP009896 exact-prefix lane

Category: Public data
Assay type: inline_barcode
Evidence level: Documented example
Dataset: SRP009896/SRR391079 inline-barcode FASTQ subsample
Condition shown: Exact fixed-position barcode demultiplexing with documented Cutadapt and hash baselines.
Primary report: docs/benchmarks/barcode_demux/README.md

What This Shows

DotMatch can reproduce a narrow exact-prefix inline-barcode demux comparison under documented semantics.
Speed numbers are attached to comparator settings rather than reported in isolation.

What It Does Not Show

This does not replace general adapter trimming.
This does not cover BCL/CBCL demultiplexing or arbitrary barcode placement.

Comparator And Validation

Comparator semantics: The checked public lane uses fixed-position k=0 DotMatch demux, Cutadapt anchored no-indel demux, and a transparent exact-prefix hash splitter baseline.

Validation: The barcode comparison gate requires evidence-ready metadata, five successful real-data repeats, assigned reads, Cutadapt rows, and the exact-prefix baseline row.

Report Examples

Barcode demux benchmark report (markdown)
Barcode raw comparison rows (csv)

Raw Artifacts

Reproduce Or Check

make bench-barcode-comparison
make barcode-comparison-gate