DotMatch Evidence Gallery
A curated map of committed DotMatch benchmark reports, public-data examples, and diagnostic report patterns.
Start here when you want to see what DotMatch does on real or deliberately diagnostic data. Each row links to the exact report, raw artifacts, command records, and a short interpretation.
Gallery
Scenario |
Category |
Dataset |
What it shows |
Primary report |
|---|---|---|---|---|
Public data |
MAGeCK/Yusa public CRISPR guide-counting FASTQs |
Known-good guide-counting lane with count agreement and Edlib validation. |
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Public data |
SRP009896/SRR391079 inline-barcode FASTQ subsample |
Exact fixed-position barcode demultiplexing with documented Cutadapt and hash baselines. |
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Report zoo |
SRP009896/SRR391079 barcode autopsy fixture |
A review-status run with low-confidence offset evidence, low assignment rate, high ambiguity, and unsafe one-edit correction. |
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Report zoo |
Committed barcode failure-mode FASTQ fixture |
Deliberately constructed reads show wrong offset, invalid window, reverse-complement candidate, and low-complexity failure modes. |
report |
|
Report zoo |
Committed barcode failure-mode FASTQ fixture |
Observed barcode sequences are within one edit of multiple targets, so k=1 rescue is unsafe. |
report |
|
Public data |
10x Genomics TotalSeq-B antibody Feature Barcode R2 sample |
Per-read fixed-window feature-barcode assignment with exact-slice baseline agreement. |
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Public data |
10x GEM-X A375 CRISPR Guide Capture R2 sample |
Single-guide fixed-window guide-capture extraction with exact-slice baseline agreement. |
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Public data |
nf-core viralrecon ARTIC V3 Illumina R1 sample |
Fixed-window primer-start assignment with exact-prefix baseline agreement. |
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Public data |
fast-adapter-trimming TruSeq R1 fixed-window sample |
Fixed-window adapter-prefix assignment with exact-slice baseline agreement. |
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Gated parser milestone |
10x Genomics Cell Ranger tiny-BCL demo run folder |
Classic per-cycle BCL output count-total validation against an available bcl2fastq row. |
Report Examples
Open the report examples for clean runs, weak barcode signal, wrong-window symptoms, unsafe correction, and validation milestones.
How To Read These Pages
Each scenario separates the observed result from what it does not establish.
Comparator settings are part of the evidence. Changing them changes the meaning of the result.
HTML, TSV, JSON, FASTQ, and raw CSV files are linked directly when they are committed.