DotMatch
User Guide
Getting Started
Command Reference
CRISPR Count First Run
DotMatch to scverse for Perturb-seq and Feature Barcodes
Streaming Python API
DotMatch AssaySpec v1
DotMatch CRISPR Count QC
DotMatch Barcode Panel Design
DotMatch Workbench
DotMatch Proposals, Performance Ideas, and Bioinformatics Adoption Roadmap
Reference
DotMatch Public Schemas
Methods and Citation Template
Citation Flywheel
Bioinformatics Evaluation Packet
External Review Packet
DotMatch Evaluation Protocol
DotMatch Workflow Integration Kit
DotMatch Workflow Integration Roadmap
Packaging Notes
Release Process
Workflow Submission Pack
Reviewer Evidence Matrix
Commercial Boundary
Evidence Packet v1
Evidence and Boundaries
Trust, Scope, and Evidence
DotMatch Evidence Notes
Barcode Validation Notes
Usability Comparison
Native Comparator Scope
Benchmark Report
DotMatch Evidence Gallery
Detailed Reports
Amplicon/Panel Assignment Evidence
Barcode Demultiplexing Benchmark
Barcode Panel Design Benchmark
BCL Demultiplexing Benchmark
CRISPR Comparison Evidence
Feature Barcode Assignment Evidence
Experimental GPU Acceleration Benchmark
Production CRISPR CPU vs Metal
DotMatch Performance Improvements - 2026-07-05
Native Edlib Benchmark Report
Oligo/Adapter Assignment Evidence
Perturb-Seq And CRISPR Guide-Capture Assignment Evidence
Public CRISPR Workflow Comparator
Real CRISPR Benchmark
DotMatch Report Examples
Amplicon primer-start assignment: ARTIC V3 public lane
Barcode autopsy: weak signal and unsafe rescue
Public barcode demux: SRP009896 exact-prefix lane
Barcode failure fixture: unsafe one-edit correction
Barcode failure fixture: wrong offset and invalid windows
Classic BCL parser milestone: 10x tiny-BCL lane
Feature barcode assignment: 10x TotalSeq-B public lane
Oligo/adapter prefix assignment: TruSeq R1 public lane
CRISPR guide capture extraction: 10x GEM-X public lane
Public CRISPR guide counting: Yusa/MAGeCK lane
Barcode Troubleshooting Report
DotMatch Public Use Records
DotMatch Public Use Record Template
DotMatch
Index
Index