Ecosystem Status

This page records the public state of DotMatch distribution, registry, and workflow integrations. It separates source readiness from upstream submission, acceptance, release, and installability. States were checked against the linked provider records on 2026-08-31.

Surface	Version or revision	Local state	Public state	Installable from that surface?
PyPI	0.4.0	Tagged release workflow passed	Published with an sdist, a universal macOS wheel, and repaired manylinux/musllinux wheels for x86_64 and aarch64	Yes: `python3 -m pip install dotmatch==0.4.0`
Bioconda	0.2.2	Clean Conda CLI smoke passes	Released for linux-64, linux-aarch64, osx-64, and osx-arm64	Yes: `conda create -n dotmatch -c conda-forge -c bioconda dotmatch=0.2.2`
Spack packages #6191	0.2.2	Package recipe reviewed upstream	Merged into `spack-packages` `develop`; recipe present	Not recorded as released here; no dated Spack release containing the recipe was verified
Galaxy IUC #8336	`b547330d0b3f9fb38368eac3a94fd84098d51031`	Four wrappers and fixtures are available	Submitted, open; lint and containerized Planemo tests pass	No; IUC merge and ToolShed publication are separate gates
nf-core/modules #12156	`77e849b86cae10557a8b17f9c86fa87f6833ece2`	Scoped `crispr_count` module and tests are available	Submitted, open	No; merge and release have not occurred
Snakemake wrappers #5825	`c0a07504c8ae48dc9d60d12cfa564320fb7f5864`	Local workflow and upstream wrapper fixtures are available	Accepted and merged into upstream `master` on 2026-08-29	Not from the current v9.16.0 tag; upstream acceptance and release remain separate records
MultiQC #3629	`166f94ce70f2bc1fdbc94f460a4c857511bf1416`	Upstream module is submitted; DotMatch 0.3.0 includes the packaged-plugin search registration fix	Submitted, open; eight checks pass and one additional Python 3.9 check is cancelled	The DotMatch plugin is installable from PyPI; no upstream MultiQC release includes the submitted module yet
bio.tools	draft metadata	`docs/registries/biotools.yml` is ready for review	Exact tool API record returns 404; no accepted DotMatch record found	No
WorkflowHub	none	Runnable repository workflow examples exist	No exact DotMatch workflow record found	No

Reproducible install checks

PyPI:

python3 -m venv .dotmatch-pypi-smoke
.dotmatch-pypi-smoke/bin/pip install dotmatch==0.4.0
.dotmatch-pypi-smoke/bin/dotmatch --version
.dotmatch-pypi-smoke/bin/dotmatch dist ACGT AGGT

Bioconda:

conda create -y -p .dotmatch-bioconda-smoke \
  -c conda-forge -c bioconda dotmatch=0.2.2
conda run -p .dotmatch-bioconda-smoke dotmatch --version
conda run -p .dotmatch-bioconda-smoke dotmatch dist ACGT AGGT

The MultiQC plugin fix can be checked from this source tree without a custom search-pattern configuration:

python3 -m venv .dotmatch-multiqc-smoke
.dotmatch-multiqc-smoke/bin/pip install ".[multiqc]"
.dotmatch-multiqc-smoke/bin/multiqc \
  examples/workflows/multiqc/data --module dotmatch \
  -o .dotmatch-multiqc-report

An open pull request is not an accepted or released integration. The Snakemake record is accepted on the default branch but remains unreleased in v9.16.0. A merged repository recipe is not described as available from a stable package-manager release until that release is verified. docs/workflow-adoption.json remains the gate for accepted workflow-manager records.